SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pereira, A. C.,2011	C/G		X² tests: X²=3.71, P-value = 0.054; Te...... X² tests: X²=3.71, P-value = 0.054; Tests Carried Out With PLINK in the 2, 000 Case/Control UCL Bipolar Sample, Dominance test, X²=5.3, P-value = 0.021, Recessitivity test, X²=0.188, P-value = 0.664, Genotypic test, X²=6.251, P-value = 0.044, Trend test, X²=3.816, P-value = 0.051 More...	Significant association was found, the effect of IGF1 on BD ...... Significant association was found, the effect of IGF1 on BD was dominant. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
IGF1	insulin-like growth factor 1 (somatomedin C)	12q23.2	1(1/0/0)

SNPs in LD with rs855288 (count: 22) View in gBrowse (chr12:102536105..102565927 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs703543			0.917[CEU]
rs855287			0.923[CEU]; 0.941[TSI]
rs703541			1.0[CEU]
rs35749			0.927[CEU]; 1.0[TSI]
rs10860877			0.849[CEU]
rs35757			0.927[CEU]
rs35755			0.862[CEU]
rs4764702			0.927[CEU]; 1.0[TSI]
rs860604			0.927[CEU]
rs2559836			0.927[CEU]; 1.0[TSI]
rs703549			0.849[CEU]
rs703545			0.804[CEU]
rs10860874			0.849[CEU]; 1.0[TSI]
rs10778177			0.926[CEU]; 1.0[TSI]
rs703546			0.927[CEU]
rs862901			0.923[CEU]
rs2607988			1.0[TSI]
rs11111302			0.849[CEU]
rs1078869			0.927[CEU]
rs855205			0.927[CEU]
rs1078870			0.927[CEU]
rs703547			0.804[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)