SNP Report

Basic Info

Name	rs854579 dbSNP Ensembl
Location	chr3:98019352 - 98019352(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.26897
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000470589, ENST00000472788, ENST00000621172); non_coding_transcript_variant(ENST00000470589)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Craddock, N., 2010			Nominal P-value = 0.0044 Nominal P-value = 0.0044	showed significant levels independent of the association at ...... showed significant levels independent of the association at the index SNP, rs7680321. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GABRR3	gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene)	3q11.2	1(1/0/0)

SNPs in LD with rs854579 (count: 3) View in gBrowse (chr3:98005450..98025767 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs832041	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs13071870	intron_variant; non_coding_transcript_variant	0.838[CEU]
rs16839096	intron_variant; non_coding_transcript_variant	0.878[CEU]; 0.823[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)