BDgene

SNP Report

Basic Info
Name rs8178992 dbSNP Ensembl
Location chr10:49655101 - 49655101(1)
Variant Alleles T/A/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.20647
Functional Annotation 3_prime_UTR_variant; missense_variant; NMD_transcript_variant; synonymous_variant.
Polyphen Annotation: benign(ENST00000395562); possibly damaging(ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559)
SIFT Annotation: deleterious(ENST00000395562, ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559)
Consequence to Transcript 3_prime_UTR_variant(ENST00000466590); missense_variant(ENST00000395562, ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559); NMD_transcript_variant(ENST00000466590); synonymous_variant(ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559, ENST00000395562)
No. of Studies 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CHAT choline O-acetyltransferase 10q11.2 1(0/1/0)

SNPs in LD with rs8178992 (count: 0) View in gBrowse (chr10:49655101..49655101 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)