SNP Report

Basic Info

Name	rs794854 dbSNP Ensembl
Location	chr6:118711163 - 118711163(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.452676
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000368488, ENST00000392500, ENST00000434604)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fan, J., 2010		C	P-value = 0.0076 in STEP1 sample; P-value = 0.033 in NIMH s...... P-value = 0.0076 in STEP1 sample; P-value = 0.033 in NIMH sample; P-value = 0.0007 in STEP1 and NIMH sample; More...	showed evidence of association in the STEP1 sample, NIMH sam...... showed evidence of association in the STEP1 sample, NIMH sample and pooled sample. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CEP85L	centrosomal protein 85kDa-like	6q22.31	1(1/0/0)

SNPs in LD with rs794854 (count: 0) View in gBrowse (chr6:118711163..118711163 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)