SNP Report

Basic Info

Name	rs762967 dbSNP Ensembl
Location	chr22:35344873 - 35344873(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.0439297
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000382034, ENST00000404284, ENST00000411850, ENST00000424387, ENST00000425375, ENST00000447733, ENST00000449058); NMD_transcript_variant(ENST00000404284, ENST00000424387); non_coding_transcript_exon_variant(ENST00000492723); non_coding_transcript_variant(ENST00000492723)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Potash, J. B., 2008	A/G		Family-based P-value = 0.12 for all BPAD subjects, family-ba...... Family-based P-value = 0.12 for all BPAD subjects, family-based P-value = 0.15 for BPAD subjects with psychotic symptoms, family-based P-value = 0.1 (3-marker sliding window with indicated marker first of the three), family-based P-value = 0.12 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms).Case-control P-value = 0.59 for all BPAD subjects, case-control P-value = 0.87 for BPAD subjects with psychotic symptoms, case-control P-value = 0.24 (3-marker sliding window with indicated marker first of the three), case-control P-value = 0.4 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms). More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TOM1	target of myb1 (chicken)	22q13.1	1(1/0/0)

SNPs in LD with rs762967 (count: 0) View in gBrowse (chr22:35344873..35344873 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)