BDgene

SNP Report

Basic Info
Name rs7578035 dbSNP Ensembl
Location chr2:98766429 - 98766429(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.4375
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000622970); intron_variant(ENST00000419865, ENST00000623301, ENST00000624259, ENST00000629175); non_coding_transcript_variant(ENST00000419865, ENST00000623301, ENST00000624259, ENST00000629175)
No. of Studies 2 (Positive: 0; Negative: 0; Trend: 2)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Green, E. K.,2012 G/T BD ImmunoChip:P-value = 0.532,OR = 1.031;ImmunoChip, PGC-BD ...... BD ImmunoChip:P-value = 0.532,OR = 1.031;ImmunoChip, PGC-BD combined data:P-balue = 0.00000413,OR = 1.083 More... Suggestive association was found. Suggestive association was found. Trend
Sklar, P.,2011 G/T Primary GWAS P-value(GC)=0.0000183, OR=1.12; replication P-v...... Primary GWAS P-value(GC)=0.0000183, OR=1.12; replication P-value(1-sided)=0.0129, OR=1.06; Combined GWAS and replication P-value(GC)=0.00000277, OR=1.09 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 0)

SNPs in LD with rs7578035 (count: 7) View in gBrowse (chr2:98766429..98773407 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016