SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pereira, A. C.,2011	A/G		X² tests: X²=1.803, P-value = 0.179 X² tests: X²=1.803, P-value = 0.179	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
IGF1	insulin-like growth factor 1 (somatomedin C)	12q23.2	1(1/0/0)

SNPs in LD with rs753479 (count: 23) View in gBrowse (chr12:102536105..102565927 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs35755			0.93[CEU]
rs2607988			0.857[CEU]
rs703546			0.857[CEU]
rs1078870			1.0[CEU]
rs855202			0.857[CEU]
rs4764702			0.857[CEU]
rs1078869			1.0[CEU]
rs10778177			0.856[CEU]
rs860604			0.857[CEU]
rs10860874			0.927[CEU]
rs2559836			0.857[CEU]
rs35760			1.0[TSI]
rs35759			0.813[CEU]
rs35749			0.857[CEU]
rs11111302			0.927[CEU]
rs855287			0.855[CEU]
rs703543			0.838[CEU]
rs10860877			0.927[CEU]; 1.0[TSI]
rs855205			1.0[CEU]; 1.0[TSI]
rs862901			0.855[CEU]
rs35757			1.0[CEU]
rs35761			0.813[CEU]; 1.0[TSI]
rs703541			0.927[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)