BDgene

SNP Report

Basic Info
Name rs7317089 dbSNP Ensembl
Location chr13:51006384 - 51006384(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.33766
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000531898); intron_variant(ENST00000485590, ENST00000493639, ENST00000533288); non_coding_transcript_variant(ENST00000485590, ENST00000493639, ENST00000533288)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Djurovic, S.,2010 Combined analysis: J4for Iceland (replication sample): P-val...... Combined analysis: J4for Iceland (replication sample): P-value = 0.003839, OR=0.8, Stouffer's z value=0.0000264 More... Suggestive association was found(P-values ranging from 5.39E...... Suggestive association was found(P-values ranging from 5.39E-07 to 9.95E-05). More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GUCY1B2 guanylate cyclase 1, soluble, beta 2 (pseudogene) 13q14.3 1(0/0/1)

SNPs in LD with rs7317089 (count: 5) View in gBrowse (chr13:51002748..51006401 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016