BDgene

SNP Report

Basic Info
Name rs729969 dbSNP Ensembl
Location chr7:55060514 - 55060514(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.148962
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000275493, ENST00000342916, ENST00000344576, ENST00000420316, ENST00000454757, ENST00000455089, ENST00000463948, LRG_304t1); non_coding_transcript_variant(ENST00000463948)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 T/C CMH (Cochran-Mantel-Haenszel) P-value = 3.30E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 3.30E-05, allelic P-value = 9.29E-06, OR=1.36, pSNP test P-value = 8.67E-06, pHAP test P-value = 8.36E-08, r2=0.68 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
EGFR epidermal growth factor receptor 7p12 1(0/0/1)

SNPs in LD with rs729969 (count: 16) View in gBrowse (chr7:55046623..55091656 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016