SNP Report

Basic Info

Name	rs7186123 dbSNP Ensembl
Location	chr16:82788147 - 82788147(1)
Variant Alleles	A/C
Ancestral Allele	A
Minor Allele	C
Minor Allele Frequence	0.0994409
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000268613, ENST00000428848, ENST00000431540, ENST00000539548, ENST00000562601, ENST00000565636, ENST00000566333, ENST00000567109, ENST00000567359, ENST00000567445, ENST00000568770, ENST00000569144); NMD_transcript_variant(ENST00000539548, ENST00000562601, ENST00000568770, ENST00000569144); non_coding_transcript_variant(ENST00000566333, ENST00000567359)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, W., 2014	G/T		P-value=7.74E-05 P-value=7.74E-05	Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CDH13	cadherin 13	16q23.3	3(2/1/0)

SNPs in LD with rs7186123 (count: 2) View in gBrowse (chr16:82788067..82790609 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs7185386		intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.825[CEU]
rs9989405		intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.825[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)