BDgene

SNP Report

Basic Info
Name rs715519 dbSNP Ensembl
Location chr22:50599940 - 50599940(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.211062
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000609758); intron_variant(ENST00000463053); non_coding_transcript_variant(ENST00000463053); upstream_gene_variant(ENST00000008876, ENST00000329492)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Severinsen, J. E., 2006 (b) C/G P-value = 0.4675 in BD, P-value = 0.7976 in BD and SZ P-value = 0.4675 in BD, P-value = 0.7976 in BD and SZ Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 22q13.33 1(0/1/0)
CHKB choline kinase beta 22q13.33 Mapped by Literature SNP

SNPs in LD with rs715519 (count: 0) View in gBrowse (chr22:50599940..50599940 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Severinsen, J. E., 2006 (b) P-value = 0.7254 in SZ, P-value = 0.7976 in BD and SZ Negative

Overlap with MDD from cross-disorder studies (count: 0)