SNP Report

Basic Info

Name	rs7108878 dbSNP Ensembl
Location	chr11:79396763 - 79396763(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.0838658
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000278550, ENST00000528688, ENST00000531583); non_coding_transcript_variant(ENST00000528688, ENST00000531583)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Forstner, A. J., 2015			P-value=3.45E-7 P-value=3.45E-7	After correction for multiple testing, nine miRNAs showed a ...... After correction for multiple testing, nine miRNAs showed a significant association with BD. More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TENM4	teneurin transmembrane protein 4	11q13	6(4/2/0)

SNPs in LD with rs7108878 (count: 4) View in gBrowse (chr11:79389112..79396763 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs12277834	intron_variant; non_coding_transcript_variant	0.891[CEU]
rs11237820	intron_variant; non_coding_transcript_variant	0.891[CEU]
rs12275195	intron_variant; non_coding_transcript_variant	0.879[CEU]
rs11237821	intron_variant; non_coding_transcript_variant	0.89[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)