BDgene

SNP Report

Basic Info
Name rs703548 dbSNP Ensembl
Location chr12:102550895 - 102550895(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.145767
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Pereira, A. C.,2011 G/A X2 tests: X2=4.04, P-value = 0.044; Te...... X2 tests: X2=4.04, P-value = 0.044; Tests Carried Out With PLINK in the 2, 000 Case/Control UCL Bipolar Sample, Dominance test, X2=5.4, P-value = 0.02, Recessitivity test, X2=0.044, P-value = 0.834, Genotypic test, X2=5.94, P-value = 0.051, Trend test, X2=4.186, P-value = 0.041 More... Significant association was found . Significant association was found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
IGF1 insulin-like growth factor 1 (somatomedin C) 12q23.2 1(1/0/0)

SNPs in LD with rs703548 (count: 20) View in gBrowse (chr12:102536105..102565396 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 20)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016