SNP Report

Basic Info

Name	rs701567 dbSNP Ensembl
Location	chr13:105489646 - 105489646(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.485224
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000329625, ENST00000375936, ENST00000448407, ENST00000471432, ENST00000473269, ENST00000488534, ENST00000489237, ENST00000559369, ENST00000595812, ENST00000600388, ENST00000601240, ENST00000618629); NMD_transcript_variant(ENST00000471432, ENST00000473269, ENST00000488534, ENST00000489237, ENST00000559369, ENST00000595812, ENST00000600388, ENST00000601240); non_coding_transcript_variant(ENST00000448407)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Dalvie, S.,2010			SNP Allele Frequencies: logistic regression, for Caucasian, ...... SNP Allele Frequencies: logistic regression, for Caucasian, , Mixed Ancestry, P-value = 0.2; for Caucasian only, P-value = 0.8961; for Mixed Ancestry only, P-value = 0.0725 More...	No significant association was observed in BP-I. No significant association was observed in BP-I.	Negative
Maheshwari, M.,2009	T/C		TDT: Raw TDT P-value = 0.889, Adaptive permutation corrected...... TDT: Raw TDT P-value = 0.889, Adaptive permutation corrected P-value = 0.75 More...	No significant allelic association with BP was found No significant allelic association with BP was found	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DAOA-AS1	DAOA antisense RNA 1	13q33.2	Mapped by Literature SNP
DAOA	D-amino acid oxidase activator	13q33.2	21(13/7/1)

SNPs in LD with rs701567 (count: 3) View in gBrowse (chr13:105477549..105489646 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs8002278	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]
rs6491961	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.848[CEU]
rs9519686	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.887[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)