SNP Report

Basic Info

Name	rs6938431 dbSNP Ensembl
Location	chr6:110424403 - 110424403(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.136581
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000330550, ENST00000368919, ENST00000451557, ENST00000460159)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fan, J., 2010		T	P-value = 0.0000672 in STEP1 sample; P-value = 0.79 in NIMH...... P-value = 0.0000672 in STEP1 sample; P-value = 0.79 in NIMH sample; P-value = 0.0027 in STEP1 and NIMH sample; P-value = 0.04 in STEP2 sample; More...	showed evidence of association in STEP1 sample, pooled sampl...... showed evidence of association in STEP1 sample, pooled sample and replication sample. More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DDO	D-aspartate oxidase	6q22.1	1(1/0/0)
SLC22A16	solute carrier family 22 (organic cation/carnitine transporter), member 16	6q21	1(1/0/0)

SNPs in LD with rs6938431 (count: 1) View in gBrowse (chr6:110420408..110424403 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs2207356		downstream_gene_variant; upstream_gene_variant	0.832[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)