BDgene

SNP Report

Basic Info
Name rs6937506 dbSNP Ensembl
Location chr6:132578260 - 132578260(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.245208
No. of Studies 3 (Positive: 0; Negative: 3; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Venken, T., 2006 P-value > 0.05 P-value > 0.05 The analysis revealed no significant associations between bi...... The analysis revealed no significant associations between bipolar disorder patients and control individuals. More... Negative
Liu, C., 2007 G/A TDT P-value = 0.42 in CNG+NIMH waves I+2, TDT P-value = 0.34...... TDT P-value = 0.42 in CNG+NIMH waves I+2, TDT P-value = 0.34 in NIMH waves 3+4 + CHIP, TDT P-value = 0.22 in Entire sample More... Negative
Pae, C. U., 2008 C/T T Allele frequency (BID vs.control) 0.16 vs. 0.15; P-value > ...... Allele frequency (BID vs.control) 0.16 vs. 0.15; P-value > 0.05 More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TAAR6 trace amine associated receptor 6 6q23.1 5(4/1/0)

SNPs in LD with rs6937506 (count: 5) View in gBrowse (chr6:132575890..132579552 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Pae, C. U., 2008 Allele frequency (SZ vs.control) 0.18 vs. 0.15; P-value > 0.05 Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016