SNP Report

Basic Info

Name	rs6913660 dbSNP Ensembl
Location	chr6:27123646 - 27123646(1)
Variant Alleles	C/A
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.0954473
Functional Annotation	downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000606923, ENST00000607124); upstream_gene_variant(ENST00000607175)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Steinberg, S.,2012		C	Association results in bipolar disorder follow-up samples(7,...... Association results in bipolar disorder follow-up samples(7,333 cases; 43,779 controls):OR(95% CI) = 1.03 (0.98, 1.09),P-value = 0.25 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HIST1H2BJ	histone cluster 1, H2bj	6p22.1	Mapped by Literature SNP

SNPs in LD with rs6913660 (count: 0) View in gBrowse (chr6:27123646..27123646 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Steinberg, S.,2012	Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.11 (1.06, 1.17),P-value = 2.3 x 10-5	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 0)