BDgene

SNP Report

Basic Info
Name rs6913660 dbSNP Ensembl
Location chr6:27123646 - 27123646(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.0954473
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000606923, ENST00000607124); upstream_gene_variant(ENST00000607175)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Steinberg, S.,2012 C Association results in bipolar disorder follow-up samples(7,...... Association results in bipolar disorder follow-up samples(7,333 cases; 43,779 controls):OR(95% CI) = 1.03 (0.98, 1.09),P-value = 0.25 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HIST1H2BJ histone cluster 1, H2bj 6p22.1 Mapped by Literature SNP

SNPs in LD with rs6913660 (count: 0) View in gBrowse (chr6:27123646..27123646 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Steinberg, S.,2012 Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.11 (1.06, 1.17),P-value = 2.3 x 10-5 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)