BDgene

SNP Report

Basic Info
Name rs6912833 dbSNP Ensembl
Location chr6:35649808 - 35649808(1)
Variant Alleles A/T
Ancestral Allele T
Minor Allele A
Minor Allele Frequence 0.219848
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000357266, ENST00000536438, ENST00000539068, ENST00000542713); upstream_gene_variant(ENST00000391277)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 A/T Single SNP analyses: Permuted P-value = 0.8034, Odds Ratio=1...... Single SNP analyses: Permuted P-value = 0.8034, Odds Ratio=1.033 More... No significant association was observed. No significant association was observed. Negative
Willour, V. L.,2009 T/A FBAT: Additive model: major allele P-value = 0.335, minor al...... FBAT: Additive model: major allele P-value = 0.335, minor allele P-value = 0.335; Dominant model: major allele P-value = 0.228, minor allele P-value = 0.654; Genotypic association: TDT P-value = 0.36 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FKBP5 FK506 binding protein 5 6p21.31 5(1/4/0)

SNPs in LD with rs6912833 (count: 11) View in gBrowse (chr6:35649808..35715771 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)