SNP Report

Basic Info

Name	rs6730107 dbSNP Ensembl
Location	chr2:240570295 - 240570295(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.163938
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000270357, ENST00000451363, ENST00000486058); non_coding_transcript_variant(ENST00000486058); upstream_gene_variant(ENST00000418505, ENST00000418708, ENST00000460884, ENST00000464550, ENST00000481757, ENST00000493398, ENST00000498042)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Feng, T.,2010			Fisher's exact tests: Empirical P-value(1, 000, 000 permutat...... Fisher's exact tests: Empirical P-value(1, 000, 000 permutations)=0.000026 More...	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RNPEPL1	arginyl aminopeptidase (aminopeptidase B)-like 1	2q37.3	2(1/0/1)
ANKMY1	ankyrin repeat and MYND domain containing 1	2q37.3	Mapped by Literature SNP

SNPs in LD with rs6730107 (count: 0) View in gBrowse (chr2:240570295..240570295 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)