SNP Report

Basic Info

Name	rs6708544 dbSNP Ensembl
Location	chr2:174739466 - 174739466(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.359824
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000442996); non_coding_transcript_variant(ENST00000442996)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2007	G/A		TDT P-value = 0.47 of Allelic Association With Bipolar Disor...... TDT P-value = 0.47 of Allelic Association With Bipolar Disorder in the Combined Sample More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CHRNA1	cholinergic receptor, nicotinic, alpha 1 (muscle)	2q31.1	2(0/1/1)

SNPs in LD with rs6708544 (count: 8) View in gBrowse (chr2:174733568..174748331 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7575145	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.972[TSI]
rs7561169	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.973[TSI]
rs2359319	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.973[TSI]
rs2167571	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs7575128	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs7574870	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs3816448	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.829[CEU]; 0.875[TSI]
rs2167570	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.973[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)