SNP Report

Basic Info

Name	rs6679053 dbSNP Ensembl
Location	chr1:242122402 - 242122402(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.164337
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000467561); intron_variant(ENST00000314833, ENST00000366545, ENST00000427495, ENST00000442594, ENST00000536534); NMD_transcript_variant(ENST00000314833, ENST00000366545)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Djurovic, S.,2010			Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.001034, OR=1.64; for Iceland (replication sample): P-value = 0.022069, OR=1.2, Stouffer's z value=0.001 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PLD5	phospholipase D family, member 5	1q43	1(0/1/0)

SNPs in LD with rs6679053 (count: 0) View in gBrowse (chr1:242122402..242122402 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)