BDgene

SNP Report

Basic Info
Name rs6597678 dbSNP Ensembl
Location chr9:131149084 - 131149084(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.0181709
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000530863); intron_variant(ENST00000359428, ENST00000411637, ENST00000415391, ENST00000451030, ENST00000525980, ENST00000586290, ENST00000587264, ENST00000587408, ENST00000588378, ENST00000589540, ENST00000589667, ENST00000590461); non_coding_transcript_variant(ENST00000415391, ENST00000525980, ENST00000586290, ENST00000587264, ENST00000587408, ENST00000588378, ENST00000589540, ENST00000589667, ENST00000590461); upstream_gene_variant(ENST00000530630)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 G/C P-value=5.75E-06 P-value=5.75E-06 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NUP214 nucleoporin 214kDa 9q34 1(0/1/0)

SNPs in LD with rs6597678 (count: 0) View in gBrowse (chr9:131149084..131149084 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)