BDgene

SNP Report

Basic Info
Name rs6565063 dbSNP Ensembl
Location chr16:82734963 - 82734963(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.160942
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000268613, ENST00000428848, ENST00000431540, ENST00000539548, ENST00000562601, ENST00000565636, ENST00000566333, ENST00000567109, ENST00000567445, ENST00000568770, ENST00000569144); NMD_transcript_variant(ENST00000539548, ENST00000562601, ENST00000568770, ENST00000569144); non_coding_transcript_variant(ENST00000566333)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 C/T Adjusted P (ADD)=2.08E-04， OR=1.354 Adjusted P (ADD)=2.08E-04， OR=1.354 SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD,...... SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD, for which at least one other non-overlapping GWAS also shows association at same gene. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CDH13 cadherin 13 16q23.3 3(2/1/0)

SNPs in LD with rs6565063 (count: 4) View in gBrowse (chr16:82718259..82738566 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016