SNP Report

Basic Info

Name	rs6547829 dbSNP Ensembl
Location	chr2:28101002 - 28101002(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.0792732
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000342045, ENST00000344773, ENST00000361704, ENST00000379624, ENST00000379629, ENST00000379632)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Cichon, S.,2011		T	For GWAS, P-value = 0.0000721, OR=1.59, for Replication I, P...... For GWAS, P-value = 0.0000721, OR=1.59, for Replication I, P-value = 0.0134, OR=1.22, for combined sample(GWAS+Replication I), P-value = 0.000025, OR=1.32 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
BRE	brain and reproductive organ-expressed (TNFRSF1A modulator)	2p23	1(0/1/0)

SNPs in LD with rs6547829 (count: 7) View in gBrowse (chr2:28078673..28189691 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs11889865	intron_variant	0.89[CEU]
rs10495762	intron_variant	0.899[CEU]
rs17759746	intron_variant	0.899[CEU]
rs7602555	intron_variant	0.899[CEU]
rs937813	intron_variant	0.899[CEU]
rs6751559	intron_variant	0.899[CEU]
rs6710247	intron_variant	0.899[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)