BDgene

SNP Report

Basic Info
Name rs6546952 dbSNP Ensembl
Location chr2:75074636 - 75074636(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.296326
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000305249, ENST00000409848)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Perlis, 2008 Mean X2=10.14, P-value = 0.02 in gene-based assoc...... Mean X2=10.14, P-value = 0.02 in gene-based association tests More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TACR1 tachykinin receptor 1 2p13.1-p12 3(3/0/0)

SNPs in LD with rs6546952 (count: 0) View in gBrowse (chr2:75074636..75074636 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)