SNP Report

Basic Info

Name	rs6502097 dbSNP Ensembl
Location	chr17:82328303 - 82328303(1)
Variant Alleles	C/G
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.16893
Functional Annotation	5_prime_UTR_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000581954); intron_variant(ENST00000269389, ENST00000580437, ENST00000581691, ENST00000581864, ENST00000582290, ENST00000582563, ENST00000583093); NMD_transcript_variant(ENST00000581864)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Matsunaga, S.,2012	C/G		Chi square test:MAF = 0.17,P-value = 0.03,OR = 1.19;MAF = 0....... Chi square test:MAF = 0.17,P-value = 0.03,OR = 1.19;MAF = 0.16,P-value = 0.61,OR = 0.94 in replication;P-value = 0.53,OR = 1.11in meta analysis More...	The SNP showed a significant association with BD. The SNP showed a significant association with BD.	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CSNK1D	casein kinase 1, delta	17q25	4(2/2/0)
SECTM1	secreted and transmembrane 1	17q25	Mapped by Literature SNP

SNPs in LD with rs6502097 (count: 0) View in gBrowse (chr17:82328303..82328303 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.16,P-value = 0.15,OR = 1.13	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Matsunaga, S.,2012	Chi square test:MAF = 0.14,P-value = 0.48,OR = 0.92	No significant association was observed.	Negative