SNP Report

Basic Info

Name	rs6479694 dbSNP Ensembl
Location	chr10:60140598 - 60140598(1)
Variant Alleles	A/C
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.0658946
Functional Annotation	5_prime_UTR_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000355288); intron_variant(ENST00000280772, ENST00000373827, ENST00000460468, ENST00000474360, ENST00000503366, ENST00000622427); NMD_transcript_variant(ENST00000622427); non_coding_transcript_exon_variant(ENST00000633779); non_coding_transcript_variant(ENST00000633779); upstream_gene_variant(ENST00000373815, ENST00000486349, ENST00000506635, ENST00000513049, ENST00000618080)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fiorentino A., 2014	A/C		eurMLP=1.46 eurMLP=1.46	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ANK3	ankyrin 3, node of Ranvier (ankyrin G)	10q21	17(13/3/1)

SNPs in LD with rs6479694 (count: 2) View in gBrowse (chr10:60136868..60153164 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs10821685		downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]
rs7073218		intron_variant; NMD_transcript_variant	1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)