BDgene

SNP Report

Basic Info
Name rs6457816 dbSNP Ensembl
Location chr6:35395071 - 35395071(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.220048
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000311565, ENST00000337400, ENST00000360694, ENST00000418635, ENST00000448077)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zandi, P. P, 2008 (a) T/C Allelic P-value = 0.08 Allelic P-value = 0.08 Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PPARD peroxisome proliferator-activated receptor delta 6p21.2 1(1/0/0)

SNPs in LD with rs6457816 (count: 8) View in gBrowse (chr6:35362253..35395071 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)