BDgene

SNP Report

Basic Info
Name rs615470 dbSNP Ensembl
Location chr15:78593646 - 78593646(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.291134
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000299565, ENST00000559576); downstream_gene_variant(ENST00000326828, ENST00000394802, ENST00000559554); intron_variant(ENST00000348639, ENST00000559002, ENST00000559658); NMD_transcript_variant(ENST00000559658); non_coding_transcript_variant(ENST00000559002); upstream_gene_variant(ENST00000567141)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2007 C/T TDT P-value = 0.092 of Allelic Association With Bipolar Diso...... TDT P-value = 0.092 of Allelic Association With Bipolar Disorder in the Combined Sample More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CHRNA5 cholinergic receptor, nicotinic, alpha 5 (neuronal) 15q24 3(2/1/0)
CHRNA3 cholinergic receptor, nicotinic, alpha 3 (neuronal) 15q24 3(1/2/0)

SNPs in LD with rs615470 (count: 21) View in gBrowse (chr15:78529723..78619661 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 21)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016