SNP Report

Basic Info

Name	rs6122972 dbSNP Ensembl
Location	chr20:50758705 - 50758705(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.188698
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000371610, ENST00000396039)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2011	A>G		GWAS P-value = 0.00000254, OR(95%CI)=2.76(1.75-4.35); Replic...... GWAS P-value = 0.00000254, OR(95%CI)=2.76(1.75-4.35); Replication P-value = 0.078, OR(95%CI)=1.5(0.92-2.44); Mantel-Haenszel P-value = 0.00000311, OR(95%CI)=2.02(1.46-2.80) More...	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PARD6B	par-6 family cell polarity regulator beta	20q13.13	1(0/0/1)

SNPs in LD with rs6122972 (count: 2) View in gBrowse (chr20:50743530..50765763 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs6126086		intron_variant	0.941[CEU]; 0.888[TSI]
rs6126095			1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)