BDgene

SNP Report

Basic Info
Name rs5930575 dbSNP Ensembl
Location chrX:132675341 - 132675341(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.00821192
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000370833, ENST00000370836, ENST00000406696, ENST00000521489)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Jamain, S., 2014 A French population: P-value=1.83E-05 French population: P-value=1.83E-05 17 SNPs showed a nominal P<5E-05, suggesting these loci may ...... 17 SNPs showed a nominal P<5E-05, suggesting these loci may be associated with vulnerability to early-onset forms of BD. More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HS6ST2 heparan sulfate 6-O-sulfotransferase 2 Xq26.2 1(0/0/1)

SNPs in LD with rs5930575 (count: 0) View in gBrowse (chrX:132675341..132675341 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)