SNP Report

Basic Info

Name	rs5750285 dbSNP Ensembl
Location	chr22:36708203 - 36708203(1)
Variant Alleles	C/G
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.464657
Functional Annotation	intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000430281); non_coding_transcript_variant(ENST00000430281); upstream_gene_variant(ENST00000300105)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Jan, W. C., 2014	C/G		OR=1.2, 95%CI=0.72-2.01, P-value=0.48 for BD-I; OR=0.79, 95%...... OR=1.2, 95%CI=0.72-2.01, P-value=0.48 for BD-I; OR=0.79, 95%CI=0.38-1.65, P-value=0.53 for BD-II. More...	Results of single marker association tests. Results of single marker association tests.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CACNG2	calcium channel, voltage-dependent, gamma subunit 2	22q13.1	3(3/0/0)

SNPs in LD with rs5750285 (count: 5) View in gBrowse (chr22:36700749..36723755 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2284016	intron_variant; upstream_gene_variant	0.954[CHB]; 0.904[JPT]
rs738518	downstream_gene_variant	1.0[CHB]
rs715541	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2267361	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 0.863[JPT]
rs2746971	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)