BDgene

SNP Report

Basic Info
Name rs5750102 dbSNP Ensembl
Location chr22:35358119 - 35358119(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.249201
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Potash, J. B., 2008 G/A Family-based P-value = 0.34 for all BPAD subjects, family-ba...... Family-based P-value = 0.34 for all BPAD subjects, family-based P-value = 0.28 for BPAD subjects with psychotic symptoms, family-based P-value = 0.06 (3-marker sliding window with indicated marker first of the three), family-based P-value = 0.09 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms).Case-control P-value = 0.63 for all BPAD subjects, case-control P-value = 0.34 for BPAD subjects with psychotic symptoms, case-control P-value = 0.066 (3-marker sliding window with indicated marker first of the three), case-control P-value = 0.17 (3-marker sliding window with indicated marker first of the three using only those BPAD subjects with psychotic symptoms). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TOM1 target of myb1 (chicken) 22q13.1 1(1/0/0)

SNPs in LD with rs5750102 (count: 5) View in gBrowse (chr22:35344135..35358119 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016