BDgene

SNP Report

Basic Info
Name rs5742678 dbSNP Ensembl
Location chr12:102420554 - 102420554(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.347444
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000307046, ENST00000337514, ENST00000392904, ENST00000392905, ENST00000424202, ENST00000456098, ENST00000635615); non_coding_transcript_variant(ENST00000635615); upstream_gene_variant(ENST00000481539)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Pereira, A. C.,2011 C/G X2 tests: X2=0.011, P-value = 0.918 X2 tests: X2=0.011, P-value = 0.918 No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
IGF1 insulin-like growth factor 1 (somatomedin C) 12q23.2 1(1/0/0)

SNPs in LD with rs5742678 (count: 12) View in gBrowse (chr12:102405458..102459394 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016