SNP Report

Basic Info

Name	rs5742612 dbSNP Ensembl
Location	chr12:102481086 - 102481086(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.114617
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000307046, ENST00000337514, ENST00000392904, ENST00000392905, ENST00000424202, ENST00000456098)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pereira, A. C.,2011	T/C		X² tests: X²=0.753, P-value = 0.385 X² tests: X²=0.753, P-value = 0.385	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
IGF1	insulin-like growth factor 1 (somatomedin C)	12q23.2	1(1/0/0)

SNPs in LD with rs5742612 (count: 4) View in gBrowse (chr12:102481086..102501478 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs11111285			1.0[CEU]
rs7965399			1.0[CEU]
rs9919733			1.0[CEU]
rs7978742			1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)