BDgene

SNP Report

Basic Info
Name rs490922 dbSNP Ensembl
Location chr5:153504263 - 153504263(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.17492
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000285900, ENST00000340592, ENST00000448073, ENST00000481559, ENST00000492291, ENST00000517469, ENST00000518142, ENST00000518783, ENST00000518862, ENST00000521843); non_coding_transcript_variant(ENST00000481559, ENST00000492291, ENST00000517469, ENST00000518862)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kerner, B.,2009 C/T FBAT: Wave 1: Z-score=3.3, P-value = 0.001; Waves 2-4: Z-sco...... FBAT: Wave 1: Z-score=3.3, P-value = 0.001; Waves 2-4: Z-score=0, P-value = 1; Waves 1-4: Z-score=2.7, P-value = 0.008 More... Significant association was observed in Wave 1 and Wave 1-4. Significant association was observed in Wave 1 and Wave 1-4. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIA1 glutamate receptor, ionotropic, AMPA 1 5q33 2(2/0/0)

SNPs in LD with rs490922 (count: 0) View in gBrowse (chr5:153504263..153504263 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)