BDgene

SNP Report

Basic Info
Name rs4864542 dbSNP Ensembl
Location chr4:55487920 - 55487920(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.377596
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000309964, ENST00000381322, ENST00000435527, ENST00000506747, ENST00000506923, ENST00000509151, ENST00000513033, ENST00000513440); non_coding_transcript_variant(ENST00000506747, ENST00000506923, ENST00000509151, ENST00000513033)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kripke, D. F.,2009 G/C TDT: In BP: OR=1.288, CHISQ=7.672, P-value = 0.0056, empiric...... TDT: In BP: OR=1.288, CHISQ=7.672, P-value = 0.0056, empirical P-value = 0.0102, corrected empirical P-value = 0.5759 More... Significant association was observed in the BP group. Significant association was observed in the BP group. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CLOCK clock circadian regulator 4q12 12(5/7/0)

SNPs in LD with rs4864542 (count: 68) View in gBrowse (chr4:55407965..55589624 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 68)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016