
Search SNP
Search Gene
Search CNV
Search Haplotype
Search Other Variant
Search Region
Search Pathway
Search Study
SNP Report
Name | rs4792887 dbSNP Ensembl | ||
---|---|---|---|
Location | chrCHR_HSCHR17_2_CTG5:45811268 - 45811268(1) | ||
Variant Alleles | T/C | ||
Ancestral Allele | C | ||
Minor Allele | T | ||
Minor Allele Frequence | 0.129992 | ||
Functional Annotation | intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant. | ||
Consequence to Transcript | intron_variant(ENST00000293493, ENST00000314537, ENST00000339069, ENST00000347197, ENST00000352855, ENST00000398285, ENST00000577353, ENST00000582766, ENST00000587305, ENST00000619154, ENST00000634540); NMD_transcript_variant(ENST00000347197); non_coding_transcript_exon_variant(ENST00000634876); non_coding_transcript_variant(ENST00000582766, ENST00000587305, ENST00000634876, ENST00000611599, ENST00000613260, ENST00000614143, ENST00000615345, ENST00000617446, ENST00000618382, ENST00000616225, ENST00000616274, ENST00000616748, ENST00000617905, ENST00000618144, ENST00000621969, ENST00000631500, ENST00000632383, ENST00000632599, ENST00000633723, ENST00000634181, ENST00000632383, ENST00000631500, ENST00000632599, ENST00000634181) | ||
No. of Studies | 4 (Positive: 0; Negative: 4; Trend: 0) | ||
Source | Literature | ||
Overlap with SZ? | NO | ||
Overlap with MDD? | YES |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Reference | Statistical Result | Description | Result Category |
---|---|---|---|
Szczepankiewicz, A., 2013 | allelic P-value=0.201, genotypic P-value=0.266, OR=1.631, 95% CI=0.665-1.080 for affective disorder; allelic P-value=0.431, genotypic P-value=0.443, OR=0.853, 95% CI=0.598-1.218 for MDD | No significant association was observed. | Negative |