BDgene

SNP Report

Basic Info
Name rs473938 dbSNP Ensembl
Location chr18:10520293 - 10520293(1)
Variant Alleles T/A
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.380192
No. of Studies 2 (Positive: 1; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Weller, A. E., 2006 A/T genotypic P-value = 0.146, allelic P-value = 0.224 genotypic P-value = 0.146, allelic P-value = 0.224 Negative
Li, X.,2009 A/T A 1.BD patients and control: Allele distribution: Permutated P...... 1.BD patients and control: Allele distribution: Permutated P-value = 0.0028, Genotype distribution: P-value = 0.0018; 2.BD-I patients and control: Allele distribution: Permutated P-value = 0.0037, Genotype distribution: P-value = 0.0023 More... Significant association was observed both in the BD group an...... Significant association was observed both in the BD group and the BD-I group. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NAPG N-ethylmaleimide-sensitive factor attachment protein, gamma 18p11.21 3(2/1/0)

SNPs in LD with rs473938 (count: 11) View in gBrowse (chr18:10514709..10555138 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016