SNP Report

Basic Info

Name	rs4669765 dbSNP Ensembl
Location	chr2:11668528 - 11668528(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.44988
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000306928); upstream_gene_variant(ENST00000399740)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Gratacos, M.,2009			Single SNP association: In control and bipolar disorder samp...... Single SNP association: In control and bipolar disorder samples: Recessive Model, P-value = 0.0175(corrected by genomic control, Reus), P-value = 0.0002(passed multiple testing correction, Madrid); OR(95% CI): Reus: 1.72 (1.16-2.53), Madrid: 2.46 (1.55-3.91) More...	Nominal statistical significance was observed as P-value < 0...... Nominal statistical significance was observed as P-value < 0.05 using both control sets under the same genotypic mode. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NTSR2	neurotensin receptor 2	2p25.1	1(1/0/0)

SNPs in LD with rs4669765 (count: 1) View in gBrowse (chr2:11668528..11677686 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs4669769		missense_variant; upstream_gene_variant	0.823[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)