BDgene

SNP Report

Basic Info
Name rs4663868 dbSNP Ensembl
Location chr2:238252450 - 238252450(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0888578
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000254657, ENST00000456601); non_coding_transcript_variant(ENST00000456601)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kripke, D. F.,2009 T/C TDT: In BP: OR=1.574, CHISQ=6.914, P-value = 0.0086, empiric...... TDT: In BP: OR=1.574, CHISQ=6.914, P-value = 0.0086, empirical P-value = 0.0171, corrected empirical P-value = 0.733 More... Significant association was observed in the BP group. Significant association was observed in the BP group. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PER2 period circadian clock 2 2q37.3 7(1/6/0)

SNPs in LD with rs4663868 (count: 10) View in gBrowse (chr2:238237319..238294521 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016