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SNP Report
Basic Info
| Name | rs4510078 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr17:82247837 - 82247837(1) | ||
| Variant Alleles | A/G | ||
| Ancestral Allele | G | ||
| Minor Allele | A | ||
| Minor Allele Frequence | 0.00638978 | ||
| Functional Annotation | downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. | ||
| Consequence to Transcript | downstream_gene_variant(ENST00000578904, ENST00000580446, ENST00000581108, ENST00000582844, ENST00000620937); intron_variant(ENST00000269361, ENST00000314028, ENST00000392334, ENST00000398519, ENST00000403276, ENST00000578501, ENST00000580565, ENST00000580784, ENST00000581737, ENST00000583025, ENST00000584377, ENST00000584672); NMD_transcript_variant(ENST00000269361, ENST00000403276, ENST00000580784, ENST00000584672); non_coding_transcript_exon_variant(ENST00000581241); non_coding_transcript_variant(ENST00000578501, ENST00000580565, ENST00000581241, ENST00000581737, ENST00000584377); upstream_gene_variant(ENST00000577578, ENST00000584913, ENST00000622924, ENST00000624920) | ||
| No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | NO | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| CSNK1D | casein kinase 1, delta | 17q25 | 4(2/2/0) |
| SLC16A3 | solute carrier family 16 (monocarboxylate transporter), member 3 | 17q25.3 | Mapped by Literature SNP |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 2)
Overlap with SZ from cross-disorder studies (count: 0)
Overlap with MDD from cross-disorder studies (count: 0)