SNP Report

Basic Info

Name	rs4450798 dbSNP Ensembl
Location	chr3:13695501 - 13695501(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.226438
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000419618, ENST00000438915); non_coding_transcript_variant(ENST00000419618, ENST00000438915)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Goes, F. S.,2012		T	OR = 1.26,P-value(Meta) = 0.00000154 OR = 1.26,P-value(Meta) = 0.00000154	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
LINC00620	long intergenic non-protein coding RNA 620	3p25.1	Mapped by Literature SNP
FBLN2	fibulin 2	3p25-p24	1(0/0/1)

SNPs in LD with rs4450798 (count: 4) View in gBrowse (chr3:13695501..13700851 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs3856823	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.91[JPT]
rs9840302	intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.91[JPT]
rs9831150	intron_variant; non_coding_transcript_variant	1.0[JPT]
rs3856821	intron_variant; non_coding_transcript_variant	0.951[CHB]; 0.827[CHD]; 0.833[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)