BDgene

SNP Report

Basic Info
Name rs4444432 dbSNP Ensembl
Location chr19:58204171 - 58204171(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.117812
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000601995); intron_variant(ENST00000326804, ENST00000345813, ENST00000424679, ENST00000594839, ENST00000610905, ENST00000615675, ENST00000617501, ENST00000619307, ENST00000621145); non_coding_transcript_variant(ENST00000615675, ENST00000619307, ENST00000621145); upstream_gene_variant(ENST00000595146)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 G/T P(unadj)-value=5.58E-06, OR (unadj)=1.402, P(adj)-value=4....... P(unadj)-value=5.58E-06, OR (unadj)=1.402, P(adj)-value=4.85E-06, OR (adj)=1.419 More... Top 68 SNPs (showing suggestive association to BD: p<0.0001)...... Top 68 SNPs (showing suggestive association to BD: p<0.0001) in our combined (CAMH and IoP) GWAS. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZNF274 zinc finger protein 274 19q13.43 2(1/1/0)

SNPs in LD with rs4444432 (count: 6) View in gBrowse (chr19:58177063..58207332 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016