BDgene

SNP Report

Basic Info
Name rs4256166 dbSNP Ensembl
Location chr3:171737087 - 171737087(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.204673
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000351298, ENST00000356327, ENST00000418087, ENST00000440204, ENST00000475273, ENST00000498278, ENST00000627725); NMD_transcript_variant(ENST00000440204); non_coding_transcript_variant(ENST00000475273, ENST00000498278)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Gratacos, M.,2009 Single SNP association: In control and bipolar disorder samp...... Single SNP association: In control and bipolar disorder samples: Recessive Model, P-value = 0.0038(corrected by genomic control, Reus), P-value = 0.0506(passed multiple testing correction, Madrid); OR(95% CI): Reus: 0.16 (0.04-0.67), Madrid: 0.26 (0.06-1.18) More... Nominal statistical significance was observed as P-value < 0...... Nominal statistical significance was observed as P-value < 0.05 using both control sets under the same genotypic mode. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PLD1 phospholipase D1, phosphatidylcholine-specific 3q26 1(1/0/0)

SNPs in LD with rs4256166 (count: 47) View in gBrowse (chr3:171700241..171802003 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 47)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016