BDgene

SNP Report

Basic Info
Name rs4148965 dbSNP Ensembl
Location chr18:9109486 - 9109486(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.360423
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000579467); intron_variant(ENST00000318388, ENST00000400033, ENST00000577703, ENST00000578850, ENST00000579126, ENST00000583375); NMD_transcript_variant(ENST00000577703); non_coding_transcript_variant(ENST00000578850, ENST00000579126, ENST00000583375)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Zhang, J.,2009 G/T T Allelic association: Odds ratio=0.971, P-value = 0.887; Geno...... Allelic association: Odds ratio=0.971, P-value = 0.887; Genotypic association: P-value = 0.143 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa 18p11.22 6(5/1/0)

SNPs in LD with rs4148965 (count: 24) View in gBrowse (chr18:9109486..9274638 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 24)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016