BDgene

SNP Report

Basic Info
Name rs4140862 dbSNP Ensembl
Location chr12:5595718 - 5595718(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.260184
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000327087, ENST00000356134, ENST00000546188)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Huang, J.,2010 A/C Omnibus GWAS Test: P-value > 5E-05 Omnibus GWAS Test: P-value > 5E-05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ANO2 anoctamin 2, calcium activated chloride channel 12p13.3 1(0/1/0)

SNPs in LD with rs4140862 (count: 0) View in gBrowse (chr12:5595718..5595718 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative