SNP Report

Basic Info

Name	rs41264743 dbSNP Ensembl
Location	chr4:3444352 - 3444352(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.00559105
Functional Annotation	downstream_gene_variant; missense_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant. Polyphen Annotation: probably damaging(ENST00000382774, ENST00000511533) SIFT Annotation: deleterious(ENST00000382774, ENST00000511533)
Consequence to Transcript	downstream_gene_variant(ENST00000336727, ENST00000338806, ENST00000344733, ENST00000504194, ENST00000509772); missense_variant(ENST00000382774, ENST00000511533); non_coding_transcript_exon_variant(ENST00000509689); non_coding_transcript_variant(ENST00000509689); upstream_gene_variant(ENST00000506132)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Georgi, B., 2014	G/T		GERP=2.89 GERP=2.89	Putative damaging exonic variants found in the five linkage ...... Putative damaging exonic variants found in the five linkage regions. More...	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HGFAC	HGF activator	4p16	1(0/0/1)
RGS12	regulator of G-protein signaling 12	4p16.3	Mapped by Literature SNP

SNPs in LD with rs41264743 (count: 0) View in gBrowse (chr4:3444352..3444352 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)