SNP Report

Basic Info

Name	rs403636 dbSNP Ensembl
Location	chrCHR_HSCHR5_3_CTG1:1389832 - 1389832(-1)
Variant Alleles	C/A
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.240216
Functional Annotation	intron_variant; downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000270349); downstream_gene_variant(ENST00000621716, ENST00000630314); upstream_gene_variant(ENST00000630039)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mick, E., 2008		A	TDT X²(df=1)=0.04, P-value = 0.928, OR (95% CI)=0...... TDT X²(df=1)=0.04, P-value = 0.928, OR (95% CI)=0.92(0.61-1.38) More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A3	solute carrier family 6 (neurotransmitter transporter), member 3	5p15.3	11(5/6/0)

SNPs in LD with rs403636 (count: 1) View in gBrowse (chrCHR_HSCHR5_3_CTG1:1389832..1413145 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs40358		intron_variant; non_coding_transcript_variant; downstream_gene_variant	0.939[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)