BDgene

SNP Report

Basic Info
Name rs3934674 dbSNP Ensembl
Location chr4:47011121 - 47011121(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.297125
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000513567)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Craddock, N., 2010 Nominal P-value = 6.87E-6 Nominal P-value = 6.87E-6 showed significant levels independent of the association at ...... showed significant levels independent of the association at the index SNP, rs7680321. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRB1 gamma-aminobutyric acid (GABA) A receptor, beta 1 4p12 3(2/0/1)
GABRA4 gamma-aminobutyric acid (GABA) A receptor, alpha 4 4p12 2(2/0/0)

SNPs in LD with rs3934674 (count: 3) View in gBrowse (chr4:47004382..47011121 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016